BRST5:Phyllodes tumour: Difference between revisions
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H. Evin Gulbahce, MD, MSCI, University of Utah, UT, USA | H. Evin Gulbahce, MD, MSCI, University of Utah, UT, USA | ||
Katherine Geiersbach, MD, Mayo Clinic - Rochester, MN, USA | |||
==WHO Classification of Disease== | ==WHO Classification of Disease== | ||
| Line 52: | Line 54: | ||
==Gene Rearrangements== | ==Gene Rearrangements== | ||
<br /> | |||
{| class="wikitable sortable" | {| class="wikitable sortable" | ||
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!Clinical Relevance Details/Other Notes | !Clinical Relevance Details/Other Notes | ||
|- | |- | ||
| | |''EGFR'' | ||
|N/A | |||
|Intragenic deletion of exons 2–7 in ''EGFR'' removes the ligand-binding domain, resulting in a constitutively active tyrosine kinase with downstream activation of multiple oncogenic pathways. | |||
|N/A | |||
|Recurrent | |||
|D, P, T | |||
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==Individual Region Genomic Gain/Loss/LOH== | ==Individual Region Genomic Gain/Loss/LOH== | ||
<br /> | |||
{| class="wikitable sortable" | {| class="wikitable sortable" | ||
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!'''Clinical Relevance Details/Other Notes''' | !'''Clinical Relevance Details/Other Notes''' | ||
|- | |- | ||
|< | |1 | ||
|Gain | |||
| | |1q (whole arm) | ||
| | |||
| | |||
| | | | ||
|Frequency in benign tumors varies, up to 33% across studies<ref name=":0">{{Cite journal|last=Laé|first=Marick|last2=La Rosa|first2=Philippe|last3=Mandel|first3=Jonas|last4=Reyal|first4=Fabien|last5=Hupé|first5=Philippe|last6=Terrier|first6=Philippe|last7=Couturier|first7=Jérôme|date=2016-12|title=Whole-genome profiling helps to classify phyllodes tumours of the breast|url=https://pubmed.ncbi.nlm.nih.gov/27207013|journal=Journal of Clinical Pathology|volume=69|issue=12|pages=1081–1087|doi=10.1136/jclinpath-2016-203684|issn=1472-4146|pmid=27207013}}</ref><ref name=":1">{{Cite journal|last=Jones|first=A. M.|last2=Mitter|first2=R.|last3=Springall|first3=R.|last4=Graham|first4=T.|last5=Winter|first5=E.|last6=Gillett|first6=C.|last7=Hanby|first7=A. M.|last8=Tomlinson|first8=I. P. M.|last9=Sawyer|first9=E. J.|date=2008-04|title=A comprehensive genetic profile of phyllodes tumours of the breast detects important mutations, intra-tumoral genetic heterogeneity and new genetic changes on recurrence|url=https://pubmed.ncbi.nlm.nih.gov/18288784|journal=The Journal of Pathology|volume=214|issue=5|pages=533–544|doi=10.1002/path.2320|issn=0022-3417|pmid=18288784}}</ref><ref name=":2">{{Cite journal|last=Lv|first=Shuhua|last2=Niu|first2=Yun|last3=Wei|first3=Li|last4=Liu|first4=Qingjie|last5=Wang|first5=Xiaowei|last6=Chen|first6=Yan|date=2008-12|title=Chromosomal aberrations and genetic relations in benign, borderline and malignant phyllodes tumors of the breast: a comparative genomic hybridization study|url=https://pubmed.ncbi.nlm.nih.gov/18189161|journal=Breast Cancer Research and Treatment|volume=112|issue=3|pages=411–418|doi=10.1007/s10549-007-9876-1|issn=1573-7217|pmid=18189161}}</ref> | |||
| | |||
| | |||
|- | |- | ||
| | |7 | ||
|Amp | |||
| | |7p11.2 | ||
| | |''EGFR'' | ||
| | |||
| | | | ||
|< | | | ||
|Amplification and/or rearrangement (most commonly loss of exons 2-7) in 33% of borderline and malignant tumors<ref name=":3">{{Cite journal|last=Gatalica|first=Zoran|last2=Vranic|first2=Semir|last3=Ghazalpour|first3=Anatole|last4=Xiu|first4=Joanne|last5=Ocal|first5=Idris Tolgay|last6=McGill|first6=John|last7=Bender|first7=Ryan P.|last8=Discianno|first8=Erin|last9=Schlum|first9=Aaron|date=2016-01-12|title=Multiplatform molecular profiling identifies potentially targetable biomarkers in malignant phyllodes tumors of the breast|url=https://pubmed.ncbi.nlm.nih.gov/26625196|journal=Oncotarget|volume=7|issue=2|pages=1707–1716|doi=10.18632/oncotarget.6421|issn=1949-2553|pmc=4811491|pmid=26625196}}</ref> | |||
|- | |- | ||
| | |7 | ||
|Gain | |||
| | |7q | ||
| | | | ||
| | |||
| | |||
| | |||
| | | | ||
|< | |Observed in 39-57% of malignant tumors, 7-13% of borderline tumors; not observed in benign tumors<ref name=":1" /> | ||
|- | |||
|8 | |||
|Gain | |||
|8q | |||
| | |||
| | |||
| | |||
|Significantly more common in malignant vs. borderline tumors<ref name=":0" /><ref name=":1" /> | |||
|- | |||
|9 | |||
|Loss | |||
|9p21 | |||
|''CDKN2A'', ''CDKN2B'' | |||
|P | |||
| | |||
|Borderline and malignant tumors; associated with recurrence<ref name=":4">{{Cite journal|last=Tsang|first=Julia Y.|last2=Shao|first2=Yan|last3=Poon|first3=Ivan K.|last4=Ni|first4=Yun-Bi|last5=Kwan|first5=Johnny S.|last6=Chow|first6=Chit|last7=Shea|first7=Ka-Ho|last8=Tse|first8=Gary M.|date=2022-10|title=Analysis of recurrent molecular alterations in phyllodes tumour of breast: insights into prognosis and pathogenesis|url=https://pubmed.ncbi.nlm.nih.gov/35691725|journal=Pathology|volume=54|issue=6|pages=678–685|doi=10.1016/j.pathol.2022.03.008|issn=1465-3931|pmid=35691725}}</ref> | |||
|- | |||
|10 | |||
|Loss | |||
|10q23.31 | |||
|''PTEN'' | |||
|P | |||
| | |||
|Mostly borderline and malignant tumors<ref>{{Cite journal|last=Kim|first=Ji-Yeon|last2=Yu|first2=Jong Han|last3=Nam|first3=Seok Jin|last4=Kim|first4=Seok Won|last5=Lee|first5=Se Kyung|last6=Park|first6=Woong-Yang|last7=Noh|first7=Dong-Young|last8=Nam|first8=Do-Hyun|last9=Park|first9=Yeon Hee|date=2018-02|title=Genetic and Clinical Characteristics of Phyllodes Tumors of the Breast|url=https://pubmed.ncbi.nlm.nih.gov/29145046|journal=Translational Oncology|volume=11|issue=1|pages=18–23|doi=10.1016/j.tranon.2017.10.002|issn=1936-5233|pmc=5684533|pmid=29145046}}</ref><ref>{{Cite journal|last=Nozad|first=Sahar|last2=Sheehan|first2=Christine E.|last3=Gay|first3=Laurie M.|last4=Elvin|first4=Julia A.|last5=Vergilio|first5=Jo-Anne|last6=Suh|first6=James|last7=Ramkissoon|first7=Shakti|last8=Schrock|first8=Alexa B.|last9=Hirshfield|first9=Kim M.|date=2017-04|title=Comprehensive genomic profiling of malignant phyllodes tumors of the breast|url=https://pubmed.ncbi.nlm.nih.gov/28210881|journal=Breast Cancer Research and Treatment|volume=162|issue=3|pages=597–602|doi=10.1007/s10549-017-4156-1|issn=1573-7217|pmid=28210881}}</ref><ref name=":0" /><ref name=":1" /> | |||
|- | |||
|13 | |||
|Loss | |||
|13q14.2 | |||
|''RB1'' | |||
| | |||
| | |||
|Mostly borderline and malignant tumors<ref name=":0" /><ref name=":1" /><ref name=":2" /> | |||
|- | |- | ||
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| Line 165: | Line 155: | ||
|} | |} | ||
==Characteristic Chromosomal or Other Global Mutational Patterns== | ==Characteristic Chromosomal or Other Global Mutational Patterns== | ||
<br /> | |||
{| class="wikitable sortable" | {| class="wikitable sortable" | ||
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| Line 175: | Line 165: | ||
!'''Established Clinical Significance Per Guidelines - Yes or No (Source)''' | !'''Established Clinical Significance Per Guidelines - Yes or No (Source)''' | ||
!'''Clinical Relevance Details/Other Notes''' | !'''Clinical Relevance Details/Other Notes''' | ||
|- | |- | ||
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!'''Clinical Relevance Details/Other Notes''' | !'''Clinical Relevance Details/Other Notes''' | ||
|- | |- | ||
|< | |''FLNA'' | ||
| | |||
|Oncogene | |||
|Common | |||
| | |||
| | |||
|No significant difference between benign, borderline, and malignant tumors<ref name=":4" /><ref name=":5">{{Cite journal|last=Tan|first=Jing|last2=Ong|first2=Choon Kiat|last3=Lim|first3=Weng Khong|last4=Ng|first4=Cedric Chuan Young|last5=Thike|first5=Aye Aye|last6=Ng|first6=Ley Moy|last7=Rajasegaran|first7=Vikneswari|last8=Myint|first8=Swe Swe|last9=Nagarajan|first9=Sanjanaa|date=2015-11|title=Genomic landscapes of breast fibroepithelial tumors|url=https://pubmed.ncbi.nlm.nih.gov/26437033|journal=Nature Genetics|volume=47|issue=11|pages=1341–1345|doi=10.1038/ng.3409|issn=1546-1718|pmid=26437033}}</ref> | |||
|- | |||
|''MED12'' | |||
|G44 residue is a hotspot | |||
|Oncogene | |||
|Common | |||
|D | |||
| | |||
|No significant difference between benign, borderline, and malignant tumors. Frequently co-mutated with ''RARA'', ''TERT'' promoter, ''SETD2'', ''EGFR''.<ref>{{Cite journal|last=Cani|first=Andi K.|last2=Hovelson|first2=Daniel H.|last3=McDaniel|first3=Andrew S.|last4=Sadis|first4=Seth|last5=Haller|first5=Michaela J.|last6=Yadati|first6=Venkata|last7=Amin|first7=Anmol M.|last8=Bratley|first8=Jarred|last9=Bandla|first9=Santhoshi|date=2015-04|title=Next-Gen Sequencing Exposes Frequent MED12 Mutations and Actionable Therapeutic Targets in Phyllodes Tumors|url=https://pubmed.ncbi.nlm.nih.gov/25593300|journal=Molecular cancer research: MCR|volume=13|issue=4|pages=613–619|doi=10.1158/1541-7786.MCR-14-0578|issn=1557-3125|pmc=4936398|pmid=25593300}}</ref><ref name=":5" /><ref name=":4" /> | |||
|- | |||
|''RARA'' | |||
| | |||
|Oncogene | |||
|Common | |||
|P | |||
| | |||
|Frequently co-mutated with ''MED12''<ref name=":4" /><ref name=":6">{{Cite journal|last=Yeong|first=Joe|last2=Thike|first2=Aye Aye|last3=Young Ng|first3=Cedric Chuan|last4=Md Nasir|first4=Nur Diyana|last5=Loh|first5=Kiley|last6=Teh|first6=Bin Tean|last7=Tan|first7=Puay Hoon|date=2017-12|title=A genetic mutation panel for differentiating malignant phyllodes tumour from metaplastic breast carcinoma|url=https://pubmed.ncbi.nlm.nih.gov/29066183|journal=Pathology|volume=49|issue=7|pages=786–789|doi=10.1016/j.pathol.2017.07.011|issn=1465-3931|pmid=29066183}}</ref> and correlated with recurrence<ref name=":4" /> | |||
|- | |||
|''TERT'' | |||
|promoter mutation | |||
|Oncogene | |||
|Common | |||
| | |||
| | |||
|No significant difference between benign, borderline, and malignant tumors. Frequently co-mutated with ''MED12''.<ref name=":4" /><ref name=":6" /> | |||
|- | |||
|''EGFR'' | |||
<br /> | <br /> | ||
| | |Exon 18-21 activating mutations | ||
|< | |Oncogene | ||
|Recurrent | |||
|< | |T | ||
|< | | | ||
|More common in malignant tumors<ref name=":4" /><ref name=":3" /> | |||
|- | |||
|''KMT2D'' | |||
|Inactivating mutations | |||
|Tumor Suppressor Gene | |||
|Recurrent | |||
| | |||
| | |||
|Inactivation results in aberrant transcription regulation via epigenetic changes. No significant difference between benign, borderline, and malignant tumors.<ref name=":4" /> | |||
|- | |||
|''NF1'' | |||
| | |||
|Tumor suppressor gene | |||
|Recurrent | |||
| | |||
| | |||
|More common in malignant tumors.<ref name=":4" /><ref name=":6" /> | |||
|- | |- | ||
| | |''PIK3CA'' | ||
| | |||
| | |Oncogene | ||
| | |Recurrent | ||
| | | | ||
| | |||
| | | | ||
|< | |More common in borderline and malignant tumors.<ref name=":4" /><ref name=":6" /> | ||
|- | |- | ||
| | |''RB1'' | ||
| | | | ||
|Tumor suppressor gene | |||
|Recurrent | |||
| | | | ||
| | |||
|More common in malignant tumors. Gene deletions also common.<ref name=":6" /><ref name=":4" /> | |||
|- | |- | ||
|''SETD2'' | |||
| | |||
|Other | |||
|Recurrent | |||
| | | | ||
| | | | ||
|Frequently co-mutated with ''MED12''. No significant difference between benign, borderline, and malignant tumors.<ref name=":6" /><ref name=":4" /> | |||
|- | |||
|''TP53'' | |||
|Inactivating mutations | |||
|Tumor suppressor gene | |||
|Recurrent | |||
| | | | ||
| | | | ||
|More common in malignant tumors.<ref name=":4" /> Germline mutations have been associated with phyllodes tumors.<ref>{{Cite journal|last=Rosenberger|first=Laura H.|last2=Thomas|first2=Samantha M.|last3=Nimbkar|first3=Suniti N.|last4=Hieken|first4=Tina J.|last5=Ludwig|first5=Kandice K.|last6=Jacobs|first6=Lisa K.|last7=Miller|first7=Megan E.|last8=Gallagher|first8=Kristalyn K.|last9=Wong|first9=Jasmine|date=2020-10|title=Germline Genetic Mutations in a Multi-center Contemporary Cohort of 550 Phyllodes Tumors: An Opportunity for Expanded Multi-gene Panel Testing|url=https://pubmed.ncbi.nlm.nih.gov/32504368|journal=Annals of Surgical Oncology|volume=27|issue=10|pages=3633–3640|doi=10.1245/s10434-020-08480-z|issn=1534-4681|pmc=9945652|pmid=32504368}}</ref> | |||
|- | |||
|''CDKN2A'' | |||
|Inactivating mutations | |||
|Tumor suppressor gene | |||
|Recurrent | |||
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|} | |} | ||
==Genetic Diagnostic Testing Methods== | ==Genetic Diagnostic Testing Methods== | ||
Next generation sequencing. Chromosomal microarray for CNV detection can be considered if NGS testing does not call CNVs. Detection of CNVs can help differentiate between fibroadenomas and phyllodes tumors. FISH for EGFR amplification can also be considered in the absence of chromosome microarray or appropriate NGS assays. | |||
==Familial Forms== | ==Familial Forms== | ||
Patients with Li-Fraumeni syndrome (germline TP53 pathogenic mutations) are at increased risk of phyllodes tumor. | |||
==Additional Information== | ==Additional Information== | ||
Due to the rarity of phyllodes tumors, most genomic studies are limited in number, and studies including patient follow-up information are very rare. Thus, the true mutation rate for rare events may vary compared to the numbers presented. In addition, very few studies have evaluated the prognostic value of genomic abnormalities. | |||
==Links== | ==Links== | ||
https://www.pathologyoutlines.com/topic/breastphyllodesgeneral.html | |||
==Notes== | ==Notes== | ||
<nowiki>*</nowiki>Primary authors will typically be those that initially create and complete the content of a page. If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the [[Leadership|''<u>Associate Editor</u>'']] or other CCGA representative. When pages have a major update, the new author will be acknowledged at the beginning of the page, and those who contributed previously will be acknowledged below as a prior author. | <nowiki>*</nowiki>Primary authors will typically be those that initially create and complete the content of a page. If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the [[Leadership|''<u>Associate Editor</u>'']] or other CCGA representative. When pages have a major update, the new author will be acknowledged at the beginning of the page, and those who contributed previously will be acknowledged below as a prior author. | ||
Prior Author(s): | Prior Author(s): | ||
<br /> | |||
==References== | |||
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