Compendium of Cancer Genome Aberrations

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'''Welcome to the Compendium of Cancer Genome Aberrations (CCGA)! The CCGA is a collaborative effort to document and describe chromosome and other genomic abnormalities in cancer structured based on current WHO classification. The Wiki style interface allows for real-time editing and content sharing within our genetics community. This resource is sponsored and supported by the [http://www.cancergenomics.org <u>Cancer Genomics Consortium (CGC)</u>] and contributed to by colleagues with an interest in clinical cytogenetics, molecular genetics and genomics in cancer.'''
'''Welcome to the CCGA!'''


*Join the CCGA community!  If you would like to contribute as an author, please complete a few brief questions on our '''[https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 <u>Volunteer Form</u>]'''.
*An open resource focused on describing clinically relevant chromosomal and genomic abnormalities in cancer​
*Intended as a companion resource to the [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours (WCT)] book series​
*Provides clinically significant genetic information for entities based on the current WCT disease ontology​
*Supported by the [https://www.cancergenomics.org/ Cancer Genomics Consortium (CGC)] and in collaboration with [https://whobluebooks.iarc.fr/about/ IARC] (publisher of the WCT book series)​
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*Contributed to by colleagues with an interest in clinical cytogenetics, molecular genetics and genomics in cancer ([https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 Volunteer Form])


*'''[Mailto:CCGA@cancergenomics.org <u>Contact us</u>]''' for more information or suggestions for updates.
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{{Box-round|title=Newest Items|titlebackground=#06B5AD|Explore the great content available in '''<u>[[Acute Myeloid Leukemia (AML) and Related Precursor Neoplasms|Acute Myeloid Leukemia (AML)]]</u>''', '''<u>[[Myelodysplastic Syndromes (MDS)|Myelodysplastic Syndromes (MDS)]]</u>''', '''<u>[[Myeloproliferative Neoplasms (MPN)|Myeloproliferative Neoplasms (MPN)]]</u>''', and '''<u>[[Myelodysplastic/Myeloproliferative Neoplasms (MDS/MPN)|Myelodysplastic/Myeloproliferative Neoplasms (MDS/MPN)]]</u>'''.
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[[File:Generic book cover heme and lymphoid.jpg|thumb|link=Tumours of Haematopoietic and Lymphoid Tissues|Search content structured based on the WHO Classification ('''click book image'''). ''Reference: World Health Organization Classification of Tumours of Haematopoietic and Lymphoid Tissues, Revised 4th edition. IARC Press: Lyon, France, 2017. The hierarchical tumour classification structure is reproduced from the [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours] with permission from the copyright holder, ©International Agency for Research on Cancer.'']]
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{{Box-round|titleforeground=white|titlebackground=#003399|title=Search Content Structured Based on the WHO Classification of Tumours (click book images below)|view-link=MediaWiki|content= Reference: [WHO Classification of Tumours.|Reference: [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours.] The hierarchical tumour classification structure is reproduced with permission from the copyright holder, [https://whobluebooks.iarc.fr/about/ ©International Agency for Research on Cancer.]}}<div style="
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  <div style="flex: 0 1 calc(20% - 10px);">[[File:CNS.png|frameless|class=responsive-img|link=CNS5:Table of Contents]]</div>
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[[File:Inv 16 pathology.png |100px|link=:Category:Diseases]] '''Diseases''' '''[[:Category:Diseases A|A]]'''
| '''[[:Category:Diseases B|B]]''' | '''[[:Category:Diseases C|C]]''' | '''[[:Category:Diseases D|D]]''' | '''[[:Category:Diseases E|E]]''' | '''[[:Category:Diseases F|F]]'''
| '''[[:Category:Diseases G|G]]''' | '''[[:Category:Diseases H|H]]''' | '''[[:Category:Diseases I|I]]''' | '''[[:Category:Diseases J|J]]''' | '''[[:Category:Diseases K|K]]''' | '''[[:Category:Diseases L|L]]''' | '''[[:Category:Diseases M|M]]''' | '''[[:Category:Diseases N|N]]''' | '''[[:Category:Diseases O|O]]''' | '''[[:Category:Diseases P|P]]''' | '''[[:Category:Diseases Q|Q]]''' | '''[[:Category:Diseases R|R]]''' | '''[[:Category:Diseases S|S]]''' | '''[[:Category:Diseases T|T]]''' | '''[[:Category:Diseases U|U]]'''
| '''[[:Category:Diseases V|V]]''' | '''[[:Category:Diseases W|W]]''' | '''[[:Category:Diseases X|X]]''' | '''[[:Category:Diseases Y|Y]]''' | '''[[:Category:Diseases Z|Z]]'''


 
[[File:CGC logo only.png|100px|link=Main_Page]]<span id="fp-span-cgc-pre"> '''CGC Workgroups Recurrent Loci Tables'''</span><span id="fp-span-cgc" style="display: block; margin-top: -62px; margin-left: 385px;"> [[AML Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|AML]] | [[MDS, MDS/MPN and MPN Tables: Recurrent Genomic Alterations Detected by Chromosomal Microarray|MDS/MPN]] | [[CLL Tables: Regions of Recurrent Copy Number Change and CN-LOH|CLL]] | [[Recurrent Genomic Alterations in Pediatric and Adult Central Nervous System Tumors Detected by Chromosomal Microarray|CNS Tumors]] | [[Plasma Cell Neoplasms Tables: Recurrent Cytogenomic Alterations|Plasma Cell Neoplasms]] | [[Breast Cancer: Recurrent Genomic Alterations|Breast Cancer]] | [[Renal Cell Neoplasia Tables: Recurrent Cytogenomic Alterations|Renal Neoplasia]] | [[B-ALL Tables: Prognostic Genomic Abnormalities and Recurrent Gene Fusions|B-ALL]]</span>
[[File:Example_translocation.png|100px|link=:Category:Structural Abnormalities]] '''Structural Abnormalities''' '''[[:Category:Structural Abnormalities Chromosome 1|1]]'''
| '''[[:Category:Structural Abnormalities Chromosome 2|2]]''' | '''[[:Category:Structural Abnormalities Chromosome 3|3]]''' | '''[[:Category:Structural Abnormalities Chromosome 4|4]]'''
| '''[[:Category:Structural Abnormalities Chromosome 5|5]]''' | '''[[:Category:Structural Abnormalities Chromosome 6|6]]'''
| '''[[:Category:Structural Abnormalities Chromosome 7|7]]''' | '''[[:Category:Structural Abnormalities Chromosome 8|8]]''' | '''[[:Category:Structural Abnormalities Chromosome 9|9]]'''
| '''[[:Category:Structural Abnormalities Chromosome 10|10]]''' | '''[[:Category:Structural Abnormalities Chromosome 11|11]]''' | '''[[:Category:Structural Abnormalities Chromosome 12|12]]'''
| '''[[:Category:Structural Abnormalities Chromosome 13|13]]''' | '''[[:Category:Structural Abnormalities Chromosome 14|14]]''' | '''[[:Category:Structural Abnormalities Chromosome 15|15]]'''
| '''[[:Category:Structural Abnormalities Chromosome 16|16]]''' | '''[[:Category:Structural Abnormalities Chromosome 17|17]]''' | '''[[:Category:Structural Abnormalities Chromosome 18|18]]'''
| '''[[:Category:Structural Abnormalities Chromosome 19|19]]''' | '''[[:Category:Structural Abnormalities Chromosome 20|20]]''' | '''[[:Category:Structural Abnormalities Chromosome 21|21]]'''
| '''[[:Category:Structural Abnormalities Chromosome 22|22]]''' | '''[[:Category:Structural Abnormalities Chromosome X|X]]''' | '''[[:Category:Structural Abnormalities Chromosome Y|Y]]'''
 
 
[[File:Fish_zoomed.png|100px|link=:Category:Cancer Genes]] '''Cancer Genes''' '''[[:Category:Cancer Genes A|A]]'''
| '''[[:Category:Cancer Genes B|B]]''' | '''[[:Category:Cancer Genes C|C]]''' | '''[[:Category:Cancer Genes D|D]]''' | '''[[:Category:Cancer Genes E|E]]''' | '''[[:Category:Cancer Genes F|F]]'''
| '''[[:Category:Cancer Genes G|G]]''' | '''[[:Category:Cancer Genes H|H]]''' | '''[[:Category:Cancer Genes I|I]]''' | '''[[:Category:Cancer Genes J|J]]''' | '''[[:Category:Cancer Genes K|K]]''' | '''[[:Category:Cancer Genes L|L]]''' | '''[[:Category:Cancer Genes M|M]]''' | '''[[:Category:Cancer Genes N|N]]''' | '''[[:Category:Cancer Genes O|O]]''' | '''[[:Category:Cancer Genes P|P]]''' | '''[[:Category:Cancer Genes Q|Q]]''' | '''[[:Category:Cancer Genes R|R]]''' | '''[[:Category:Cancer Genes S|S]]''' | '''[[:Category:Cancer Genes T|T]]''' | '''[[:Category:Cancer Genes U|U]]'''
| '''[[:Category:Cancer Genes V|V]]''' | '''[[:Category:Cancer Genes W|W]]''' | '''[[:Category:Cancer Genes X|X]]''' | '''[[:Category:Cancer Genes Y|Y]]''' | '''[[:Category:Cancer Genes Z|Z]]'''
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[[File:Circos.png|100px|link=Main_Page]] '''Cancer Genomes''' [[Hematologic and Lymphoid]] | [[Solid Tumors]] | [[CNS]] | [[Pediatric]]
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[[File:CGC logo only.png|100px|link=Main_Page]]<span style=""> '''CGC Workgroups Recurrent Loci Tables'''</span><span style="display: block;   margin-top: -40px;   margin-left: 105px;"> [[AML Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|AML]] | [[MDS, MDS/MPN and MPN Tables: Recurrent Genomic Alterations Detected by Chromosomal Microarray|MDS/MPN]] | [[CLL Tables: Regions of Recurrent Copy Number Change and CN-LOH|CLL]] | [[Recurrent Genomic Alterations in Pediatric and Adult Central Nervous System Tumors Detected by Chromosomal Microarray|CNS Tumors]] | [[Plasma Cell Neoplasms Tables: Recurrent Cytogenomic Alterations|Plasma Cell Neoplasms]] | [[Breast Cancer Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|Breast Cancer]] | [[Renal Cell Neoplasia Tables: Recurrent Cytogenomic Alterations|Renal Neoplasia]]</span>
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