Associate Editor Instructions: Difference between revisions - Compendium of Cancer Genome Aberrations

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====Book Conversion (Moving Content to a New WHO Book; HAEM4 to HAEM5 as an example):====

*Content moved from a prior page will be present beneath a purple instructional box (see example image below). The author should use that content and other current sources to update the content in the related section above it. You can then have the authors or you delete the old content and purple instructional boxes.

**Note: The purple instructional boxes can be TRICKY to remove and so if you need help, please don't worry about it and just email CCGA@cancergenomics.org when the page is complete to get help on the removal.

**Note: Most testing for this process has used Google Chrome as the browser. Other browsers may have issues in transferring data between sections.

For the HAEM4 to HAEM5 book conversion, several key automatic processes were performed with the following page conversion types ~~(HAEM4 pages have been assigned to HAEM5 counterparts when possible)~~:

For the HAEM4 to HAEM5 book conversion, several key automatic processes were performed with the following page conversion types:

#HAEM4 ~~pages~~ have been assigned to HAEM5 counterparts when possible.

#Note: HAEM4 content have been assigned to HAEM5 counterparts when possible.

##New disease entity in HAEM5 - no prior content to convert.

##New disease entity in HAEM5 - no prior content to convert (add content from scratch).

##Disease entity only in HAEM4 and not in HAEM5 - no content was converted.

##Same disease entity exists in HAEM4 and HAEM5 but no prior content added into HAEM4 page - no content to bring over to HAEM5 page (add content from scratch).

##Same disease entity exists in HAEM4 and HAEM5 with prior content added into HAEM4 page - content brought in from HAEM4 page ~~and needs to be updated~~.

##Same disease entity exists in HAEM4 and HAEM5 with prior content added into HAEM4 page - content brought in from HAEM4 page (update content).

##Disease entity in HAEM5 represents multiple diseases in HAEM4 - Content from most completed HAEM4 page added to HAEM5 page with notes in conversion instructions on the HAEM5 page indicating all the relevant HAEM4 pages to consider for content.

##Disease entity in HAEM5 represents multiple diseases in HAEM4 - Content from most completed HAEM4 page added to HAEM5 page with notes in conversion instructions on the HAEM5 page indicating all the relevant HAEM4 pages to consider for content (update content).

##Disease entity in HAEM4 is now split into multiple disease entities in HAEM5 -

##Disease entity in HAEM4 is now split into multiple disease entities in HAEM5 - Notes in conversion instructions on each relevant HAEM5 page indicate the relevant HAEM4 page to consider for content (update content).

##Note: The automated process has also attempted to convert older template structure to the current template on all HAEM5 pages when possible. This changes the structure of several key tables in particular. Please take the relevant content from each section and incorporate it into the new sections.

[[File:HAEM4 content example.png||frameless|900x900px]]

#If a HAEM5 page has one of more HAEM4 pages, the contents of one of the pages ~~will have been~~ automatically transferred~~. The~~ relevant pages HAEM4 pages ~~can be found~~ in the ~~conversion nots~~ box at the top of each page. The first indicated page ~~will have~~ had its contents transferred~~. Other relevant pages will be listed as well~~. If relevant pages were empty or if no relevant pages were identified, there will not be a ~~conversion~~ box.

If a HAEM5 page has one or more HAEM4 pages, see example below of the contents of one of the pages being automatically transferred and that all the relevant pages HAEM4 pages are listed in the Conversion Notes box at the top of each page. The first indicated page is the one that had its contents transferred. If relevant pages were empty or if no relevant pages were identified, there will not be a Conversion Notes box.

[[File:HAEM4 conversion example.png||frameless|900x900px]]

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Extra functionality if of interest - Browsing history interactively (see image below): Each revision represents a single "save" by an author/editor. There may be multiple revisions to review, and '''each revision may have multiple changes within it'''. A visual representation of the changes can be used to select and approve a subset of the changes. However, for any revision to be accepted, all previous revisions must also be accepted. To visualize the changes, click on the “Browse history interactively” bar on the top and compare different versions: [[File:Editor06.png|frameless|900x900px]]

~~There are several ways to view the revisions.~~ Each revision represents a single "save" by an author/editor. There may be multiple revisions to review, and '''each revision may have multiple changes within it'''. A visual representation of the changes can be used to select and approve a subset of the changes. However, for any revision to be accepted, all previous revisions must also be accepted. To visualize the changes, click on the “Browse history interactively” bar on the top and compare different versions: [[File:Editor06.png|frameless|900x900px]]

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 ====Book Conversion (Moving Content to a New WHO Book; HAEM4 to HAEM5 as an example):====
+*Content moved from a prior page will be present beneath a purple instructional box (see example image below).  The author should use that content and other current sources to update the content in the related section above it.  You can then have the authors or you delete the old content and purple instructional boxes.
+**Note: The purple instructional boxes can be TRICKY to remove and so if you need help, please don't worry about it and just email CCGA@cancergenomics.org when the page is complete to get help on the removal.
 **Note: Most testing for this process has used Google Chrome as the browser. Other browsers may have issues in transferring data between sections.
-For the HAEM4 to HAEM5 book conversion, several key automatic processes were performed with the following page conversion types (HAEM4 pages have been assigned to HAEM5 counterparts when possible):
+For the HAEM4 to HAEM5 book conversion, several key automatic processes were performed with the following page conversion types:
-#HAEM4 pages have been assigned to HAEM5 counterparts when possible.
+#Note: HAEM4 content have been assigned to HAEM5 counterparts when possible.
-##New disease entity in HAEM5 - no prior content to convert.
+##New disease entity in HAEM5 - no prior content to convert (add content from scratch).
 ##Disease entity only in HAEM4 and not in HAEM5 - no content was converted.
 ##Same disease entity exists in HAEM4 and HAEM5 but no prior content added into HAEM4 page - no content to bring over to HAEM5 page (add content from scratch).
-##Same disease entity exists in HAEM4 and HAEM5 with prior content added into HAEM4 page - content brought in from HAEM4 page and needs to be updated.
+##Same disease entity exists in HAEM4 and HAEM5 with prior content added into HAEM4 page - content brought in from HAEM4 page (update content).
-##Disease entity in HAEM5 represents multiple diseases in HAEM4 - Content from most completed HAEM4 page added to HAEM5 page with notes in conversion instructions on the HAEM5 page indicating all the relevant HAEM4 pages to consider for content.
+##Disease entity in HAEM5 represents multiple diseases in HAEM4 - Content from most completed HAEM4 page added to HAEM5 page with notes in conversion instructions on the HAEM5 page indicating all the relevant HAEM4 pages to consider for content (update content).
-##Disease entity in HAEM4 is now split into multiple disease entities in HAEM5 -
+##Disease entity in HAEM4 is now split into multiple disease entities in HAEM5 - Notes in conversion instructions on each relevant HAEM5 page indicate the relevant HAEM4 page to consider for content (update content).
 ##Note: The automated process has also attempted to convert older template structure to the current template on all HAEM5 pages when possible. This changes the structure of several key tables in particular.  Please take the relevant content from each section and incorporate it into the new sections.
 [[File:HAEM4 content example.png||frameless|900x900px]]
-#If a HAEM5 page has one of more HAEM4 pages, the contents of one of the pages will have been automatically transferred. The relevant pages HAEM4 pages can be found in the conversion nots box at the top of each page. The first indicated page will have had its contents transferred. Other relevant pages will be listed as well. If relevant pages were empty or if no relevant pages were identified, there will not be a conversion box.
+If a HAEM5 page has one or more HAEM4 pages, see example below of the contents of one of the pages being automatically transferred and that all the relevant pages HAEM4 pages are listed in the Conversion Notes box at the top of each page. The first indicated page is the one that had its contents transferred. If relevant pages were empty or if no relevant pages were identified, there will not be a Conversion Notes box.
 [[File:HAEM4 conversion example.png||frameless|900x900px]]
@@ Line 108: / Line 110: @@
+<u>Extra functionality if of interest</u> - Browsing history interactively (see image below): Each revision represents a single "save" by an author/editor. There may be multiple revisions to review, and '''each revision may have multiple changes within it'''. A visual representation of the changes can be used to select and approve a subset of the changes. However, for any revision to be accepted, all previous revisions must also be accepted. To visualize the changes, click on the “Browse history interactively” bar on the top and compare different versions:  <br />[[File:Editor06.png|frameless|900x900px]]  <br />
-There are several ways to view the revisions. Each revision represents a single "save" by an author/editor. There may be multiple revisions to review, and '''each revision may have multiple changes within it'''. A visual representation of the changes can be used to select and approve a subset of the changes. However, for any revision to be accepted, all previous revisions must also be accepted. To visualize the changes, click on the “Browse history interactively” bar on the top and compare different versions:  <br />[[File:Editor06.png|frameless|900x900px]]  <br />