The Compendium of Cancer Genome Aberrations: Difference between revisions

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+'''Welcome to the CCGA!'''
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+*An open resource focused on describing clinically relevant chromosomal and genomic abnormalities in cancer
+*Intended as a companion resource to the [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours (WCT)] book series
+*Provides clinically significant genetic information for entities based on the current WCT disease ontology
+*Supported by the [https://www.cancergenomics.org/ Cancer Genomics Consortium (CGC)] and in collaboration with [https://whobluebooks.iarc.fr/about/ IARC] (publisher of the WCT book series)
+*Crowdsourced using a wiki-style interface, allowing for real-time editing and content sharing
+*Contributed to by colleagues with an interest in clinical cytogenetics, molecular genetics and genomics in cancer ([https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 Volunteer Form])
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+{{Box-round|titleforeground=white|titlebackground=#003399|title=Search Content Structured Based on the WHO Classification of Tumours (click book images below)|view-link=MediaWiki|content= Reference: [WHO Classification of Tumours.|Reference: [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours.] The hierarchical tumour classification structure is reproduced with permission from the copyright holder, [https://whobluebooks.iarc.fr/about/ ©International Agency for Research on Cancer.]}}<div style="
+  display: flex;
+  flex-wrap: wrap;
+  justify-content: center;
+  gap: 10px;
+"><div style="flex: 0 1 calc(20% - 10px);">[[File:Haem.png|frameless|class=responsive-img|link=HAEM5:Table of Contents]]</div>
+  <div style="flex: 0 1 calc(20% - 10px);">[[File:CNS.png|frameless|class=responsive-img|link=CNS5:Table of Contents]]</div>
+  <div style="flex: 0 1 calc(20% - 10px);">[[File:BRST.png|frameless|class=responsive-img|link=BRST5:Table of Contents]]</div>
+  <div style="flex: 0 1 calc(20% - 10px);">[[File:STBT.png|frameless|class=responsive-img|link=STBT5:Table of Contents]]</div>
+  <div style="flex: 0 1 calc(20% - 10px);">[[File:Gts.png|frameless|class=responsive-img|link=GTS5:Table of Contents]]</div>
+</div>
-[[File:Generic book cover heme and lymphoid.jpg|thumb|link=HAEM5:Table_of_Contents|Search content structured based on the WHO Classification ('''click book image'''). ''Reference: WHO Classification of Tumours Editorial Board. [https://tumourclassification.iarc.who.int/chapters/63 Haematolymphoid tumours] [Internet; beta version ahead of print]. Lyon (France): International Agency for Research on Cancer; 2022. The hierarchical tumour classification structure is reproduced from the [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours] with permission from the copyright holder, ©International Agency for Research on Cancer.''|alt=]]
-<br>
-'''Welcome to the Compendium of Cancer Genome Aberrations (CCGA)! The CCGA is a collaborative effort to document and describe clinically relevant chromosomal and other genomic abnormalities in cancer structured based on [https://tumourclassification.iarc.who.int/welcome/ current WHO classification] as published by [https://whobluebooks.iarc.fr/about/ IARC]. The Wiki style interface allows for real-time editing and content sharing within our genetics community. This resource is sponsored and supported by the [http://www.cancergenomics.org <u>Cancer Genomics Consortium (CGC)</u>] and contributed to by colleagues with an interest in clinical cytogenetics, molecular genetics and genomics in cancer.'''
+[[File:CGC logo only.png|100px|link=Main_Page]]<span id="fp-span-cgc-pre"> '''CGC Workgroups Recurrent Loci Tables'''</span><span id="fp-span-cgc" style="display: block; margin-top: -62px; margin-left: 385px;"> [[AML Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|AML]] | [[MDS, MDS/MPN and MPN Tables: Recurrent Genomic Alterations Detected by Chromosomal Microarray|MDS/MPN]] | [[CLL Tables: Regions of Recurrent Copy Number Change and CN-LOH|CLL]] | [[Recurrent Genomic Alterations in Pediatric and Adult Central Nervous System Tumors Detected by Chromosomal Microarray|CNS Tumors]] | [[Plasma Cell Neoplasms Tables: Recurrent Cytogenomic Alterations|Plasma Cell Neoplasms]] | [[Breast Cancer: Recurrent Genomic Alterations|Breast Cancer]] | [[Renal Cell Neoplasia Tables: Recurrent Cytogenomic Alterations|Renal Neoplasia]] | [[B-ALL Tables: Prognostic Genomic Abnormalities and Recurrent Gene Fusions|B-ALL]]</span>
 <br>
 <br>
-*Join the CCGA community!  If you would like to contribute as an '''<u>[[Description of CCGA Roles|Author or Other Role]]</u>''', please complete a few brief questions on our '''[https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 <u>Volunteer Form</u>]'''.  We are creating content for all diseases with genetic findings in the current WHO Classification of Tumours books. [[Volunteer Assignments and Opportunities|'''<u>Please join the effort by looking through the authorship opportunities</u>''']]!
+<div style="clear: both;"></div>
+<div id="bottom-fp-links" style="margin: auto;">
-*'''[Mailto:CCGA@cancergenomics.org <u>Contact us</u>]''' for more information or suggestions for updates.
-*Meet our '''<u>[[Leadership|Editorial Leadership]]</u>''', '''<u>[[CCGA Workgroup|CCGA Workgroup Members]]</u>''' and [[Communications Liaison|<u>'''Communications Liaison'''</u>]].
+<div style="height:150px;"><div class="bottom-fp-links-column" style="width: 15%; float: left;">
+			<div style="float: left; padding-left: 50px; padding-right: 20px; height: 150px;">
-*For contributors, we've created a '''<u>[[Video_Tutorial|Video Tutorial]]</u>''' demonstrating how to add content to the CCGA. Please also refer to helpful '''<u>[[Author Instructions|Author Instructions]]</u>'''.
+				[[File:Logo-black.png.twimg.2560.png|30px|link=https://twitter.com/ccgawiki]]
-*Become a part of our Twitter family for the latest updates [https://twitter.com/ccgawiki '''@ccgawiki'''].
+			</div>
+			<div>							</div>
+		</div>
+		<div class="bottom-fp-links-column" style="width: 15%; float: left;">
-[[File:CGC logo only.png|100px|link=Main_Page]]<span id="fp-span-cgc-pre"> '''CGC Workgroups Recurrent Loci Tables'''</span><span id="fp-span-cgc" style="display: block; margin-top: -62px; margin-left: 385px;"> [[AML Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|AML]] | [[MDS, MDS/MPN and MPN Tables: Recurrent Genomic Alterations Detected by Chromosomal Microarray|MDS/MPN]] | [[CLL Tables: Regions of Recurrent Copy Number Change and CN-LOH|CLL]] | [[Recurrent Genomic Alterations in Pediatric and Adult Central Nervous System Tumors Detected by Chromosomal Microarray|CNS Tumors]] | [[Plasma Cell Neoplasms Tables: Recurrent Cytogenomic Alterations|Plasma Cell Neoplasms]] | [[Breast Cancer Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|Breast Cancer]] | [[Renal Cell Neoplasia Tables: Recurrent Cytogenomic Alterations|Renal Neoplasia]] | [[B-ALL Tables: Prognostic Genomic Abnormalities and Recurrent Gene Fusions|B-ALL]]</span>
+			<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
-<br>
+				[[File:174857.png|30px|link=https://www.linkedin.com/company/102061440/admin/dashboard/]]
-<br>
+			</div>
-<br>
+			<div>							</div>
-<div id="bottom-fp-links" style="margin: auto;">
+		</div>
-	<div style="height:150px;">
+              <div class="bottom-fp-links-column" style="width: 24%; float: left;">
-		<div class="bottom-fp-links-column" style="width: 24%; float: left;">
+			<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
-			<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;................">
 				[[File:Plus2.png|30px|link=[[Video Tutorials]]]]
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-				<h4>[[Video Tutorials]]</h4>
+				<h4>Author Resources</h4>
+				- [[Author Instructions]]
+				- [[Video Tutorials]]
+				- [[Volunteer_Assignments_and_Opportunities|Authorship Assignment]]
 			</div>
 		</div>
-		<div class="bottom-fp-links-column" style="width: 24%; float: left;">
+		<div class="bottom-fp-links-column" style="width: 19%; float: left;">
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-				[[File:Arrow.png|30px]]
+				[[File:Arrow.png|30px|link=[[Join Us!]]]]
 			</div>
 			<div>
-				<h4>[[Join Us!]]</h4>
+				<h4>Join Us!</h4>
+				- [[About Us]]
+				- [https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 Volunteer Form]
+				- [[Description_of_CCGA_Roles|Role Descriptions]]
 			</div>
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-                 <div class="bottom-fp-links-column" style="width: 24%; float: left;">
+                 <div class="bottom-fp-links-column" style="width: 19%; float: left;">
-			<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
+			<div style="float: left; padding-left: 10px; padding-right: 15px; height: 150px;">
-				[[File:Ask.png|30px]]
+				[[File:Ask.png|30px|link=[[Frequently Asked Questions (FAQs)]]]]
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 			<div>
-				<h4>[[Frequently Asked Questions (FAQs)|Frequently Asked Questions (FAQs)]]</h4>
+				<h4>Frequently Asked Questions</h4>
+				- [[Frequently Asked Questions (FAQs)|FAQs]]
+				- [[Contact us|Contact Us]]
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