BRST5:Inflammatory myofibroblastic tumour: Difference between revisions

[checked revision]

← Older edit Newer edit →

VisualWikitext

@@ Line 1: / Line 1: @@
 <span style="color:#0070C0">(''General Instructions – The focus of these pages is the clinically significant genetic alterations in each disease type. This is based on up-to-date knowledge from multiple resources such as PubMed and the WHO classification books. The CCGA is meant to be a supplemental resource to the WHO classification books; the CCGA captures in a continually updated wiki-stye manner the current genetics/genomics knowledge of each disease, which evolves more rapidly than books can be revised and published. If the same disease is described in multiple WHO classification books, the genetics-related information for that disease will be consolidated into a single main page that has this template (other pages would only contain a link to this main page). Use [https://www.genenames.org/ <u>HUGO-approved gene names and symbols</u>] (italicized when appropriate), [https://varnomen.hgvs.org/ <u>HGVS-based nomenclature for variants</u>], as well as generic names of drugs and testing platforms or assays if applicable. Please complete tables whenever possible and do not delete them (add N/A if not applicable in the table and delete the examples); to add (or move) a row or column in a table, click nearby within the table and select the > symbol that appears. Please do not delete or alter the section headings. The use of bullet points alongside short blocks of text rather than only large paragraphs is encouraged. Additional instructions below in italicized blue text should not be included in the final page content. Please also see'' </span><u>''[[Author_Instructions]]''</u><span style="color:#0070C0"> ''and [[Frequently Asked Questions (FAQs)|<u>FAQs</u>]] as well as contact your [[Leadership|<u>Associate Editor</u>]] or [mailto:CCGA@cancergenomics.org <u>Technical Support</u>].)''</span>
 ==Primary Author(s)*==
-Put your text here<span style="color:#0070C0"> (''<span class="blue-text">EXAMPLE:</span>'' Jane Smith, PhD) </span>
+Yajuan Liu, PhD and Katherine Geiersbach, MD
 ==WHO Classification of Disease==
 <span style="color:#0070C0">(''Instructions: This table’s content from the WHO book will be <u>autocompleted</u>.'')</span>
@@ Line 49: / Line 49: @@
 ==Gene Rearrangements==
-Put your text here and fill in the table <span style="color:#0070C0">(''Instructions: Details on clinical significance such as prognosis and other important information can be provided in the notes section. Please include references throughout the table. Do not delete the table.'')</span>
+Formerly referred to as inflammatory pseudotumor, inflammatory myofibroblastic tumor of the breast relies upon morphologic, immunohistochemical, and/or molecular features shared in common with other primary tumor sites.<ref>{{Cite journal|last=Khanafshar|first=Elham|last2=Phillipson|first2=Julia|last3=Schammel|first3=David P.|last4=Minobe|first4=Lorraine|last5=Cymerman|first5=Judith|last6=Weidner|first6=Noel|date=2005-06|title=Inflammatory myofibroblastic tumor of the breast|url=https://pubmed.ncbi.nlm.nih.gov/15944952|journal=Annals of Diagnostic Pathology|volume=9|issue=3|pages=123–129|doi=10.1016/j.anndiagpath.2005.02.001|issn=1092-9134|pmid=15944952}}</ref><ref>{{Cite journal|last=Haj|first=Mahmoud|last2=Weiss|first2=Michael|last3=Loberant|first3=Norman|last4=Cohen|first4=Isaac|date=2003|title=Inflammatory pseudotumor of the breast: case report and literature review|url=https://pubmed.ncbi.nlm.nih.gov/12968967|journal=The Breast Journal|volume=9|issue=5|pages=423–425|doi=10.1046/j.1524-4741.2003.09516.x|issn=1075-122X|pmid=12968967}}</ref><ref>{{Cite journal|last=Zhao|first=Hua-Dong|last2=Wu|first2=Tao|last3=Wang|first3=Jun-Qing|last4=Zhang|first4=Wen-Dong|last5=He|first5=Xian-Li|last6=Bao|first6=Guo-Qiang|last7=Li|first7=Yi|last8=Gong|first8=Li|last9=Wang|first9=Qing|date=2013-01|title=Primary inflammatory myofibroblastic tumor of the breast with rapid recurrence and metastasis: A case report|url=https://pubmed.ncbi.nlm.nih.gov/23255901|journal=Oncology Letters|volume=5|issue=1|pages=97–100|doi=10.3892/ol.2012.948|issn=1792-1074|pmc=3525499|pmid=23255901}}</ref><ref>{{Cite journal|last=Kovács|first=Anikó|last2=Máthé|first2=Gyöngyvér|last3=Mattsson|first3=Jan|last4=Stenman|first4=Göran|last5=Kindblom|first5=Lars-Gunnar|date=2015|title=ALK-Positive Inflammatory Myofibroblastic Tumor of the Nipple During Pregnancy-An Unusual Presentation of a Rare Disease|url=https://pubmed.ncbi.nlm.nih.gov/25772857|journal=The Breast Journal|volume=21|issue=3|pages=297–302|doi=10.1111/tbj.12404|issn=1524-4741|pmid=25772857}}</ref> Confirmation of ALK or other gene rearrangements supports the diagnosis and can identify therapeutic targets<ref>{{Cite journal|last=Chmiel|first=Paulina|last2=SłOWIKOWSKA|first2=Aleksandra|last3=Banaszek|first3=Łukasz|last4=Szumera-CIEćKIEWICZ|first4=Anna|last5=Szostakowski|first5=BARTłOMIEJ|last6=SPAłEK|first6=Mateusz J.|last7=Świtaj|first7=Tomasz|last8=Rutkowski|first8=Piotr|last9=Czarnecka|first9=Anna M.|date=2024|title=Inflammatory myofibroblastic tumor from molecular diagnostics to current treatment|url=https://pubmed.ncbi.nlm.nih.gov/38948020|journal=Oncology Research|volume=32|issue=7|pages=1141–1162|doi=10.32604/or.2024.050350|issn=1555-3906|pmc=PMC11209743|pmid=38948020}}</ref>. However, molecular confirmation is not required if ALK immunohistochemistry is definitively positive.<ref>{{Cite journal|last=Coffin|first=C. M.|last2=Patel|first2=A.|last3=Perkins|first3=S.|last4=Elenitoba-Johnson|first4=K. S.|last5=Perlman|first5=E.|last6=Griffin|first6=C. A.|date=2001-06|title=ALK1 and p80 expression and chromosomal rearrangements involving 2p23 in inflammatory myofibroblastic tumor|url=https://pubmed.ncbi.nlm.nih.gov/11406658|journal=Modern Pathology: An Official Journal of the United States and Canadian Academy of Pathology, Inc|volume=14|issue=6|pages=569–576|doi=10.1038/modpathol.3880352|issn=0893-3952|pmid=11406658}}</ref><ref>{{Cite journal|last=Cook|first=J. R.|last2=Dehner|first2=L. P.|last3=Collins|first3=M. H.|last4=Ma|first4=Z.|last5=Morris|first5=S. W.|last6=Coffin|first6=C. M.|last7=Hill|first7=D. A.|date=2001-11|title=Anaplastic lymphoma kinase (ALK) expression in the inflammatory myofibroblastic tumor: a comparative immunohistochemical study|url=https://pubmed.ncbi.nlm.nih.gov/11684952|journal=The American Journal of Surgical Pathology|volume=25|issue=11|pages=1364–1371|doi=10.1097/00000478-200111000-00003|issn=0147-5185|pmid=11684952}}</ref><ref>{{Cite journal|last=Pickett|first=Justine L.|last2=Chou|first2=Angela|last3=Andrici|first3=Juliana A.|last4=Clarkson|first4=Adele|last5=Sioson|first5=Loretta|last6=Sheen|first6=Amy|last7=Reagh|first7=Jessica|last8=Najdawi|first8=Fedaa|last9=Kim|first9=Yoomee|date=2017-10|title=Inflammatory Myofibroblastic Tumors of the Female Genital Tract Are Under-recognized: A Low Threshold for ALK Immunohistochemistry Is Required|url=https://pubmed.ncbi.nlm.nih.gov/28731868|journal=The American Journal of Surgical Pathology|volume=41|issue=10|pages=1433–1442|doi=10.1097/PAS.0000000000000909|issn=1532-0979|pmc=5598906|pmid=28731868}}</ref> Of note, exceptional situations such as inversion of ALK on the same chromosome arm may lead to a false-negative FISH result<ref>{{Cite journal|last=Haimes|first=Josh D.|last2=Stewart|first2=Colin J. R.|last3=Kudlow|first3=Brian A.|last4=Culver|first4=Brady P.|last5=Meng|first5=Bo|last6=Koay|first6=Eleanor|last7=Whitehouse|first7=Ann|last8=Cope|first8=Nichola|last9=Lee|first9=Jen-Chieh|date=2017-06|title=Uterine Inflammatory Myofibroblastic Tumors Frequently Harbor ALK Fusions With IGFBP5 and THBS1|url=https://pubmed.ncbi.nlm.nih.gov/28490045|journal=The American Journal of Surgical Pathology|volume=41|issue=6|pages=773–780|doi=10.1097/PAS.0000000000000801|issn=1532-0979|pmid=28490045}}</ref>, and other molecular testing such as RNA-Seq can be used to detect ALK fusions efficiently. In ALK-negative cases, immunohistochemistry for ROS1 and/or molecular tests for non-ALK gene fusions (e.g. NTRK3) may be useful.<ref>{{Cite journal|last=Hornick|first=Jason L.|last2=Sholl|first2=Lynette M.|last3=Dal Cin|first3=Paola|last4=Childress|first4=Merrida A.|last5=Lovly|first5=Christine M.|date=2015-05|title=Expression of ROS1 predicts ROS1 gene rearrangement in inflammatory myofibroblastic tumors|url=https://pubmed.ncbi.nlm.nih.gov/25612511|journal=Modern Pathology: An Official Journal of the United States and Canadian Academy of Pathology, Inc|volume=28|issue=5|pages=732–739|doi=10.1038/modpathol.2014.165|issn=1530-0285|pmc=5874150|pmid=25612511}}</ref><ref>{{Cite journal|last=Yamamoto|first=Hidetaka|last2=Yoshida|first2=Akihiko|last3=Taguchi|first3=Kenichi|last4=Kohashi|first4=Kenichi|last5=Hatanaka|first5=Yui|last6=Yamashita|first6=Atsushi|last7=Mori|first7=Daisuke|last8=Oda|first8=Yoshinao|date=2016-07|title=ALK, ROS1 and NTRK3 gene rearrangements in inflammatory myofibroblastic tumours|url=https://pubmed.ncbi.nlm.nih.gov/26647767|journal=Histopathology|volume=69|issue=1|pages=72–83|doi=10.1111/his.12910|issn=1365-2559|pmid=26647767}}</ref><ref>{{Cite journal|last=Lovly|first=Christine M.|last2=Gupta|first2=Abha|last3=Lipson|first3=Doron|last4=Otto|first4=Geoff|last5=Brennan|first5=Tina|last6=Chung|first6=Catherine T.|last7=Borinstein|first7=Scott C.|last8=Ross|first8=Jeffrey S.|last9=Stephens|first9=Philip J.|date=2014-08|title=Inflammatory myofibroblastic tumors harbor multiple potentially actionable kinase fusions|url=https://pubmed.ncbi.nlm.nih.gov/24875859|journal=Cancer Discovery|volume=4|issue=8|pages=889–895|doi=10.1158/2159-8290.CD-14-0377|issn=2159-8290|pmc=4125481|pmid=24875859}}</ref><ref>{{Cite journal|last=Alassiri|first=Ali H.|last2=Ali|first2=Rola H.|last3=Shen|first3=Yaoqing|last4=Lum|first4=Amy|last5=Strahlendorf|first5=Caron|last6=Deyell|first6=Rebecca|last7=Rassekh|first7=Rod|last8=Sorensen|first8=Poul H.|last9=Laskin|first9=Janessa|date=2016-08|title=ETV6-NTRK3 Is Expressed in a Subset of ALK-Negative Inflammatory Myofibroblastic Tumors|url=https://pubmed.ncbi.nlm.nih.gov/27259007|journal=The American Journal of Surgical Pathology|volume=40|issue=8|pages=1051–1061|doi=10.1097/PAS.0000000000000677|issn=1532-0979|pmid=27259007}}</ref><ref>{{Cite journal|last=Antonescu|first=Cristina R.|last2=Suurmeijer|first2=Albert J. H.|last3=Zhang|first3=Lei|last4=Sung|first4=Yun-Shao|last5=Jungbluth|first5=Achim A.|last6=Travis|first6=William D.|last7=Al-Ahmadie|first7=Hikmat|last8=Fletcher|first8=Christopher D. M.|last9=Alaggio|first9=Rita|date=2015-07|title=Molecular characterization of inflammatory myofibroblastic tumors with frequent ALK and ROS1 gene fusions and rare novel RET rearrangement|url=https://pubmed.ncbi.nlm.nih.gov/25723109|journal=The American Journal of Surgical Pathology|volume=39|issue=7|pages=957–967|doi=10.1097/PAS.0000000000000404|issn=1532-0979|pmc=4465992|pmid=25723109}}</ref> <span style="color:#0070C0">(''Instructions: Details on clinical significance such as prognosis and other important information can be provided in the notes section. Please include references throughout the table. Do not delete the table.'')</span>
 {| class="wikitable sortable"
 |-
@@ Line 58: / Line 58: @@
 !Clinical Relevance Details/Other Notes
 |-
-|<span class="blue-text">EXAMPLE:</span> ''ABL1''||<span class="blue-text">EXAMPLE:</span> ''BCR::ABL1''||<span class="blue-text">EXAMPLE:</span> The pathogenic derivative is the der(22) resulting in fusion of 5’ BCR and 3’ABL1.||<span class="blue-text">EXAMPLE:</span> t(9;22)(q34;q11.2)
+|''ALK''||''TPM3''::''ALK, TPM4''::''ALK, EML4''::''ALK'', ''RANBP2''::''ALK, CLTC''::''ALK'', and others||Fusions result in constitutive activation of the ''ALK'' tyrosine kinase. The most common ''ALK'' fusion breakpoints occur in intron 19 of ''ALK''. At the transcript level, a variable (5’) partner gene is fused to 3’ ''ALK'' at exon 20. At the DNA level, alternative ''ALK'' breakpoints in rare cases occur upstream of exon 19, most commonly in intron 18.||
-|<span class="blue-text">EXAMPLE:</span> Common (CML)
+|
-|<span class="blue-text">EXAMPLE:</span> D, P, T
+|D, T
 |<span class="blue-text">EXAMPLE:</span> Yes (WHO, NCCN)
-|<span class="blue-text">EXAMPLE:</span>
+|
-The t(9;22) is diagnostic of CML in the appropriate morphology and clinical context (add reference). This fusion is responsive to targeted therapy such as Imatinib (Gleevec) (add reference). BCR::ABL1 is generally favorable in CML (add reference).
 |-
-|<span class="blue-text">EXAMPLE:</span> ''CIC''
+|''ROS1''
-|<span class="blue-text">EXAMPLE:</span> ''CIC::DUX4''
+|''TFG''::''ROS1'', ''YWHAE''::''ROS1'', and others
-|<span class="blue-text">EXAMPLE:</span> Typically, the last exon of ''CIC'' is fused to ''DUX4''. The fusion breakpoint in ''CIC'' is usually intra-exonic and removes an inhibitory sequence, upregulating ''PEA3'' genes downstream of ''CIC'' including ''ETV1'', ''ETV4'', and ''ETV5''.
+|Fusions result in constitutive activation of the ''ROS1'' tyrosine kinase. Most common ''ROS1'' breakpoints occur in intron 35; at the transcript level, various 5' partner genes are fused to exon 36 of ''ROS1''.
-|<span class="blue-text">EXAMPLE:</span> t(4;19)(q25;q13)
+|
-|<span class="blue-text">EXAMPLE:</span> Common (CIC-rearranged sarcoma)
+|
-|<span class="blue-text">EXAMPLE:</span> D
+|D, T
+|
 |
-|<span class="blue-text">EXAMPLE:</span>
-''DUX4'' has many homologous genes; an alternate translocation in a minority of cases is t(10;19), but this is usually indistinguishable from t(4;19) by short-read sequencing (add references).
 |-
-|<span class="blue-text">EXAMPLE:</span> ''ALK''
+|''NTRK3''
-|<span class="blue-text">EXAMPLE:</span> ''ELM4::ALK''
+|''ETV6''::''NTRK3'' and others
+|Fusions result in constitutive activation of the ''NTRK3'' tyrosine kinase.
+|
-Other fusion partners include ''KIF5B, NPM1, STRN, TFG, TPM3, CLTC, KLC1''
+|
-|<span class="blue-text">EXAMPLE:</span> Fusions result in constitutive activation of the ''ALK'' tyrosine kinase. The most common ''ALK'' fusion is ''EML4::ALK'', with breakpoints in intron 19 of ''ALK''. At the transcript level, a variable (5’) partner gene is fused to 3’ ''ALK'' at exon 20. Rarely, ''ALK'' fusions contain exon 19 due to breakpoints in intron 18.
+|D, T
-|<span class="blue-text">EXAMPLE:</span> N/A
+|
-|<span class="blue-text">EXAMPLE:</span> Rare (Lung adenocarcinoma)
-|<span class="blue-text">EXAMPLE:</span> T
 |
-|<span class="blue-text">EXAMPLE:</span>
-Both balanced and unbalanced forms are observed by FISH (add references).
 |-
-|<span class="blue-text">EXAMPLE:</span> ''ABL1''
+|''NTRK1''
-|<span class="blue-text">EXAMPLE:</span> N/A
-|<span class="blue-text">EXAMPLE:</span> Intragenic deletion of exons 2–7 in ''EGFR'' removes the ligand-binding domain, resulting in a constitutively active tyrosine kinase with downstream activation of multiple oncogenic pathways.
-|<span class="blue-text">EXAMPLE:</span> N/A
-|<span class="blue-text">EXAMPLE:</span> Recurrent (IDH-wildtype Glioblastoma)
-|<span class="blue-text">EXAMPLE:</span> D, P, T
 |
+|Fusions result in constitutive activation of the ''NTRK1'' tyrosine kinase.
 |
-|-
 |
+|D, T
 |
 |
+|-
+|''PDGFRB''
+|''NAB2''::''PDGFRB'' and others
 |
 |
 |
+|D, T
 |
 |
@@ Line 117: / Line 109: @@
 !'''Clinical Relevance Details/Other Notes'''
 |-
-|<span class="blue-text">EXAMPLE:</span>
-|<span class="blue-text">EXAMPLE:</span> Loss
-|<span class="blue-text">EXAMPLE:</span>
-chr7
-|<span class="blue-text">EXAMPLE:</span>
-Unknown
-|<span class="blue-text">EXAMPLE:</span> D, P
-|<span class="blue-text">EXAMPLE:</span> No
-|<span class="blue-text">EXAMPLE:</span>
-Presence of monosomy 7 (or 7q deletion) is sufficient for a diagnosis of AML with MDS-related changes when there is ≥20% blasts and no prior therapy (add reference).  Monosomy 7/7q deletion is associated with a poor prognosis in AML (add references).
-|-
-|<span class="blue-text">EXAMPLE:</span>
-|<span class="blue-text">EXAMPLE:</span> Gain
-|<span class="blue-text">EXAMPLE:</span>
-chr8
-|<span class="blue-text">EXAMPLE:</span>
-Unknown
-|<span class="blue-text">EXAMPLE:</span> D, P
 |
-|<span class="blue-text">EXAMPLE:</span>
-Common recurrent secondary finding for t(8;21) (add references).
-|-
-|<span class="blue-text">EXAMPLE:</span>
-|<span class="blue-text">EXAMPLE:</span> Amp
-|<span class="blue-text">EXAMPLE:</span>
-q12; chr17:39,700,064-39,728,658 [hg38; 28.6 kb]
-|<span class="blue-text">EXAMPLE:</span>
-''ERBB2''
-|<span class="blue-text">EXAMPLE:</span> D, P, T
 |
-|<span class="blue-text">EXAMPLE:</span>
+|
-Amplification of ''ERBB2'' is associated with HER2 overexpression in HER2 positive breast cancer (add references). Add criteria for how amplification is defined.
+|
+|
+|
+|
 |-
 |
@@ Line 173: / Line 137: @@
 !'''Clinical Relevance Details/Other Notes'''
 |-
-|<span class="blue-text">EXAMPLE:</span>
-Co-deletion of 1p and 18q
-|<span class="blue-text">EXAMPLE:</span> See chromosomal rearrangements table as this pattern is due to an unbalanced derivative translocation associated with oligodendroglioma (add reference).
-|<span class="blue-text">EXAMPLE:</span> Common (Oligodendroglioma)
-|<span class="blue-text">EXAMPLE:</span> D, P
 |
 |
-|-
-|<span class="blue-text">EXAMPLE:</span>
-Microsatellite instability - hypermutated
 |
-|<span class="blue-text">EXAMPLE:</span> Common (Endometrial carcinoma)
+|
-|<span class="blue-text">EXAMPLE:</span> P, T
 |
 |
@@ Line 206: / Line 161: @@
 !'''Clinical Relevance Details/Other Notes'''
 |-
-|<span class="blue-text">EXAMPLE:</span>''EGFR''
+|<br />
-<br />
-|<span class="blue-text">EXAMPLE:</span> Exon 18-21 activating mutations
-|<span class="blue-text">EXAMPLE:</span> Oncogene
-|<span class="blue-text">EXAMPLE:</span> Common (lung cancer)
-|<span class="blue-text">EXAMPLE:</span> T
-|<span class="blue-text">EXAMPLE:</span> Yes (NCCN)
-|<span class="blue-text">EXAMPLE:</span> Exons 18, 19, and 21 mutations are targetable for therapy. Exon 20 T790M variants cause resistance to first generation TKI therapy and are targetable by second and third generation TKIs (add references).
-|-
-|<span class="blue-text">EXAMPLE:</span> ''TP53''; Variable LOF mutations
-<br />
-|<span class="blue-text">EXAMPLE:</span> Variable LOF mutations
-|<span class="blue-text">EXAMPLE:</span> Tumor Supressor Gene
-|<span class="blue-text">EXAMPLE:</span> Common (breast cancer)
-|<span class="blue-text">EXAMPLE:</span> P
-|
-|<span class="blue-text">EXAMPLE:</span> >90% are somatic; rare germline alterations associated with Li-Fraumeni syndrome (add reference). Denotes a poor prognosis in breast cancer.
-|-
-|<span class="blue-text">EXAMPLE:</span> ''BRAF''; Activating mutations
-|<span class="blue-text">EXAMPLE:</span> Activating mutations
-|<span class="blue-text">EXAMPLE:</span> Oncogene
-|<span class="blue-text">EXAMPLE:</span> Common (melanoma)
-|<span class="blue-text">EXAMPLE:</span> T
-|
-|
-|-
-|
 |
 |
@@ Line 249: / Line 177: @@
 !Gene; Genetic Alteration!!Pathway!!Pathophysiologic Outcome
 |-
-|<span class="blue-text">EXAMPLE:</span> ''BRAF'' and ''MAP2K1''; Activating mutations
+|''ALK, ROS1, NTRK3, NTRK1, RET, PDGFRB, RET,'' and other tyrosine kinase genes; Activating gene fusions
-|<span class="blue-text">EXAMPLE:</span> MAPK signaling
+|JAK/STAT3, PI3K, RAS/RAF/MAPK signaling
-|<span class="blue-text">EXAMPLE:</span> Increased cell growth and proliferation
+|Increased cell growth and proliferation
-|-
-|<span class="blue-text">EXAMPLE:</span> ''CDKN2A''; Inactivating mutations
-|<span class="blue-text">EXAMPLE:</span> Cell cycle regulation
-|<span class="blue-text">EXAMPLE:</span> Unregulated cell division
-|-
-|<span class="blue-text">EXAMPLE:</span> ''KMT2C'' and ''ARID1A''; Inactivating mutations
-|<span class="blue-text">EXAMPLE:</span> Histone modification, chromatin remodeling
-|<span class="blue-text">EXAMPLE:</span> Abnormal gene expression program
 |-
 |